Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID58957_PtRNAdb
Plant SourceManihot esculenta     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-LG5.trna51
tRNA locuschr-LG5 : 22543698 - 22543620 (-)
IsoacceptorSup

[NOTE: User can view the results of the consensus based study of all the tRNAs of Sup isoacceptor in Manihot_esculenta plant by clicking on the isoacceptor]

IsodecoderCTA

[NOTE: User can view the results of the consensus based study of all the tRNAs of CTA isodecoder in Manihot_esculenta plant by clicking on the isodecoder]

tRNA Sequence
B-Box
AGATCCATCAGCTCAAAGCGGTAAGAGCGCCCAGGTCTAACGTTCTGGGAGGATGGTGGTTCGAATCCACCTGGATCTT
tRNA secondary structure
>>>>>>>...>>>>..........<<<<.>>>>>..........<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
AGGTGGAAATTTTGAAAATTGGCTTTGAAGTGGCGGACGGTTAAATATTGCTTTCTTAGGAAGCATGTTAAACGTGAGAAATCAAGTTATGAACATGTGT
Downstream sequence (upto 100nt)
TTCTTAGCAAAAGCTTTATTTTTCTCGCAACTTAAAGCTTTATTTGTGTTTGCTTATAGAGAGAGCTAAACTGCGTAAGTTAGATAGATTGTACTCGTAA
Mature tRNA
AGAUCCAUCAGCUCAAAGCGGUAAGAGCGCCCAGGUCUAAUCUGGGAGGAUGGUGGUUCGAAUCCACCUGGAUCUU
Intron Sequence
CGT
Intron Position41-43
Infernal Score40.2
HMM Score14.50
Secondary structure Score25.70