Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID58891_PtRNAdb
Plant SourceManihot esculenta     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-LG4.trna17
tRNA locuschr-LG4 : 26067804 - 26067723 (-)
IsoacceptorSer

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ser isoacceptor in Manihot_esculenta plant by clicking on the isoacceptor]

IsodecoderCGA

[NOTE: User can view the results of the consensus based study of all the tRNAs of CGA isodecoder in Manihot_esculenta plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GTCGATATGTCCGAGTGGTTAAGGAGACAGACTCGAAATCTGTTGGGCTTTGCCTGCGCAGGTTCGAATCCTGCTGTCGACG
tRNA secondary structure
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CATATATATATATATGTTTTTTTTGAACATTATTAGTGAATTTTATTGCCTGTGATAATATTTATATTAAACAATTTACAGATGCCAATTCAACAAGTTG
Downstream sequence (upto 100nt)
TTTTCGACATTTTTTTTCGCCTTGGTTTATGTCGAATTTGTACGCTTCTCCAAGGGTAAATACGTCATTTCATTGCTAGAAGGCTGGGAGCTTGAACCAT
Mature tRNA
GUCGAUAUGUCCGAGUGGUUAAGGAGACAGACUCGAAAUCUGUUGGGCUUUGCCUGCGCAGGUUCGAAUCCUGCUGUCGACG
HMM Score46.60
Secondary structure Score32.30