Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID58881_PtRNAdb
Plant SourceManihot esculenta     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-LG3.trna6
tRNA locuschr-LG3 : 4712999 - 4713071 (+)
IsoacceptorGlu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Glu isoacceptor in Manihot_esculenta plant by clicking on the isoacceptor]

IsodecoderCTC

[NOTE: User can view the results of the consensus based study of all the tRNAs of CTC isodecoder in Manihot_esculenta plant by clicking on the isodecoder]

tRNA Sequence
B-Box
TCCGTTGTAGTCTAGTTTGTCAGGATACTCGGCTCTCACCCGAAAGACCCGGGTTCGATTCCCGGCAACGGAA
tRNA secondary structure
>>>>>>>..>>>>.........<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
AAATTATCCTTGATTTCGAGATAAACTAATATGGGTGTGATCTGGTAAACTAACAGTGACAGAGACTTATACAAAAAATTAGAACTGAAAACATTATTCA
Downstream sequence (upto 100nt)
GGCTTATTTTTTCCACACATACAGTTAAAGGCGAGGCCTTGCAAGAAGGTGTAAGGTTATAAAATATTAATATCAAAGAATCGGTAAATAACGAATGGTC
Mature tRNA
UCCGUUGUAGUCUAGUUUGUCAGGAUACUCGGCUCUCACCCGAAAGACCCGGGUUCGAUUCCCGGCAACGGAA
HMM Score45.10
Secondary structure Score20.50