Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID58824_PtRNAdb
Plant SourceManihot esculenta     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-LG2.trna36
tRNA locuschr-LG2 : 10119754 - 10119681 (-)
IsoacceptorIle

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ile isoacceptor in Manihot_esculenta plant by clicking on the isoacceptor]

IsodecoderAAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of AAT isodecoder in Manihot_esculenta plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GGCCCATTAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCAGGTTCGAGACCTGCATGGGCCA
tRNA secondary structure
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
AAAATTATAATATATCATATGTAAAATAAAAATAAAGTGTAACCTTATAATATATAATTTAAACAAGAGAAGATAGCTTAAGAGAGCCCTTAATCAAAAG
Downstream sequence (upto 100nt)
CCGCTTTCCTTTTTACTAAAAAATGCCAATGTCACGCTCTTGATTCATCCCTAAACCAACCAACATGATTAGTTCATTGCAGTCTTTTAAAATTGAGCTT
Mature tRNA
GGCCCAUUAGCUCAGUUGGUUAGAGCGUCGUGCUAAUAACGCGAAGGUCGCAGGUUCGAGACCUGCAUGGGCCA
HMM Score58.30
Secondary structure Score26.60