Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID58709_PtRNAdb
Plant SourceManihot esculenta     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-LG18.trna27
tRNA locuschr-LG18 : 2545154 - 2545076 (-)
IsoacceptorLeu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Leu isoacceptor in Manihot_esculenta plant by clicking on the isoacceptor]

IsodecoderCAA

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAA isodecoder in Manihot_esculenta plant by clicking on the isodecoder]

tRNA Sequence
B-Box
AGGTCCATTAGCTCAAAGCGGTAAGAGCGCTCAGGTCAACTGGCCTGGGAGGATGGTGGTTCGAATCCGCCTGGATCTT
tRNA secondary structure
>>>>>>>...>>>>..........<<<<.>>>>>..........<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
ATTGTATGTGAAAAAGGAGGAAAAAAAAATCGGAGGGAAATAGTTTTAAATTCCAGGAGGAATGACATAAGGTGAGGAATTGGGTAATTGTATCCCTCGC
Downstream sequence (upto 100nt)
TTTCCTTAATGAGCACGTGTGTCAGAGGCGTTGAAAGCGGGATCTAATAAGATATGCTTTTTGAAATATAATATCAACTGTTGCAATGGAGATGTTATTT
Mature tRNA
AGGUCCAUUAGCUCAAAGCGGUAAGAGCGCUCAGGUCAACCCUGGGAGGAUGGUGGUUCGAAUCCGCCUGGAUCUU
Intron Sequence
TGG
Intron Position41-43
Infernal Score28.9
HMM Score14.40
Secondary structure Score14.50