Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID58430_PtRNAdb
Plant SourceManihot esculenta     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-LG11.trna13
tRNA locuschr-LG11 : 22931121 - 22931192 (+)
IsoacceptorThr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Thr isoacceptor in Manihot_esculenta plant by clicking on the isoacceptor]

IsodecoderTGT

[NOTE: User can view the results of the consensus based study of all the tRNAs of TGT isodecoder in Manihot_esculenta plant by clicking on the isodecoder]

tRNA Sequence
GCCCTTATAGCTCAGTGGTAGAGCGTCAGTCTTGTAAACTGAAGGTCCGTAGTTCAATCCTGCGTGAGGGCA
tRNA secondary structure
>>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
GTGAGAGGGAAAGAGAATTCATTTGAAACTGTATCGTTTTTCCTTTGTTGAAATGGTATATTTTTGTGAAATAATCTCACAATATTTCACTTTTGTAGTA
Downstream sequence (upto 100nt)
TTTCTATAGTTATTATTGAATTTTATCAATTTAAATATATGATATATTATAATTTTTAAATATTATATTATTTATTTATTAGACATATAAACTCGAATGT
Mature tRNA
GCCCUUAUAGCUCAGUGGUAGAGCGUCAGUCUUGUAAACUGAAGGUCCGUAGUUCAAUCCUGCGUGAGGGCA
HMM Score57.00
Secondary structure Score26.20