Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID57976_PtRNAdb
Plant SourceMalus domestica     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-16.trna24
tRNA locuschr-16 : 33637637 - 33637558 (-)
IsoacceptorVal

[NOTE: User can view the results of the consensus based study of all the tRNAs of Val isoacceptor in Malus_domestica plant by clicking on the isoacceptor]

IsodecoderCAC

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAC isodecoder in Malus_domestica plant by clicking on the isodecoder]

tRNA Sequence
GCTTGGGGAGGTTAATGTGTAGTCGGTTATCACGCTAGTCTCACACATTAGGGGTCCCGGTTCGAACTCGGGCTCAGACA
tRNA secondary structure
>.>>>>>.........>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<.<.
Upstream sequence (upto 100nt)
GAAAGGGAAGGGTTTAAATGGTGATGAGGAAGACCAATAACCAGACCCACTTGCAGTGAAATGTTTTATTAAAAAACAAATTACGTATGCATACTGGTAG
Downstream sequence (upto 100nt)
CTTATTTCATTAAATTTACTTTAAAAGAAAAAAATATATATGACCTTGTGATCACTGGTGGATCCATGTAGGGACCCGGGGATCCTGGGACCCTTCGGAA
Mature tRNA
GCUUGGGGAGGUUAAUGUGUAGUCGGUUAUCACGCUAGUCUCACACAUUAGGGGUCCCGGUUCGAACUCGGGCUCAGACA
HMM Score22.20
Secondary structure Score15.60