Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID57934_PtRNAdb
Plant SourceMalus domestica     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-15.trna47
tRNA locuschr-15 : 22083329 - 22083245 (-)
IsoacceptorSer

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ser isoacceptor in Malus_domestica plant by clicking on the isoacceptor]

IsodecoderGCT

[NOTE: User can view the results of the consensus based study of all the tRNAs of GCT isodecoder in Malus_domestica plant by clicking on the isodecoder]

tRNA Sequence
B-Box
AGATCTGTAAGCTCAAAAATGGTAGAGCGCTCGGAGTCCTTTGCTGGGCTTTGGGAGGTTGGTGGTTCGAATCCCCCCAGATCTG
tRNA secondary structure
>>>>>>>...>>>>..........<<<<........>>>.............<<<.....>>.>>.......<<.<<<<<<<<<.
Upstream sequence (upto 100nt)
ATGAAGGTCGTCTAAAATGTTTTCAAGGCTACCGTGCCTGGTGGTAATCGATTCGCTTTTTCGGTTGCTTCAATTGAATTACGAGACATGTTTGAAATGA
Downstream sequence (upto 100nt)
CTATTCTTTGATTTCGAATTTGTTTGGCCATGATTGATAAGGACATTAATTATCCTCTTTTGCGTTTTAAAAAAATGGTTGGGTTCCAAGGTCAGTTTAC
Mature tRNA
AGAUCUGUAAGCUCAAAAAUGGUAGAGCGCUCGGAGUCCUUUGCUGUUGGGAGGUUGGUGGUUCGAAUCCCCCCAGAUCUG
Intron Sequence
GGCT
Intron Position47-50
Infernal Score22.8
HMM Score11.50
Secondary structure Score11.30