Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID57625_PtRNAdb
Plant SourceLupinus angustifolius     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA ID19.trna21
tRNA locuschr-LG-19 : 5690008 - 5689925 (-)
IsoacceptorLeu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Leu isoacceptor in Lupinus_angustifolius plant by clicking on the isoacceptor]

IsodecoderTAA

[NOTE: User can view the results of the consensus based study of all the tRNAs of TAA isodecoder in Lupinus_angustifolius plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GCAGGTTTGCCCGAGTGGTTAAGGGGGAAGACTTAAGATCTTCTGCATTTGAAATGCGCGTGGGTTCGAACCCCACAGCCTGCA
tRNA secondary structure
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>>...<<<<<..>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
ATTTAATGAAAAACAGTAACTTGTGCTAGAAATCATTTTATCAAAATCCTGCAGAATTATATGGTGATCTAACTTAGAAAGAAAGAAAACGCCATCAGTG
Downstream sequence (upto 100nt)
TTTTATATTTTATGTTTATGATTTTCTCTATTAGCGTGTTCATTTATTGTTTTCTATATTTGACTTTTCACCATAAAGTTGCATGTGAACTCTGAATCAA
Mature tRNA
GCAGGUUUGCCCGAGUGGUUAAGGGGGAAGACUUAAGAUCUUCUGCAUUUGAAAUGCGCGUGGGUUCGAACCCCACAGCCUGCA
HMM Score35.90
Secondary structure Score31.20