Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID57595_PtRNAdb
Plant SourceLupinus angustifolius     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA ID18.trna38
tRNA locuschr-LG-18 : 15824728 - 15824651 (-)
IsoacceptorVal

[NOTE: User can view the results of the consensus based study of all the tRNAs of Val isoacceptor in Lupinus_angustifolius plant by clicking on the isoacceptor]

IsodecoderCAC

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAC isodecoder in Lupinus_angustifolius plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GTATTGGTCTAGTGGTGTAAGACCATATTTGATCCACAGGATGACCAAAAGATCAAGGTTCGATTCCTGGGAACTACA
tRNA secondary structure
>>>...>>>>.........<<<<....>>>>..............<<<<....>.>>>.......<<<.<....<<<.
Upstream sequence (upto 100nt)
CTCATCATGAGTTCCCTGGCAACATGCATGTGAACAATTGGCATGTGTACCTGTGTACATTACTACATTCTACATTAACAACTAGGAAGCTACCAATAAA
Downstream sequence (upto 100nt)
TTTGTTGGGAGGGGTAGTCATGCACCCAAAAATGATTAATTCCTTATCCAAAATGGTGAGAGGATACCCTTGGTAGTATAAAAAAACTAGGAAGCTGCTA
Mature tRNA
GUAUUGGUCUAGUGGUGUAAGACCAUAUUUGAUCCACAACCAAAAGAUCAAGGUUCGAUUCCUGGGAACUACA
Intron Sequence
GGATG
Intron Position39-43
Infernal Score21.1
HMM Score13.40
Secondary structure Score7.70