Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID57482_PtRNAdb
Plant SourceLupinus angustifolius     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA ID15.trna17
tRNA locuschr-LG-15 : 22553466 - 22553539 (+)
IsoacceptorVal

[NOTE: User can view the results of the consensus based study of all the tRNAs of Val isoacceptor in Lupinus_angustifolius plant by clicking on the isoacceptor]

IsodecoderAAC

[NOTE: User can view the results of the consensus based study of all the tRNAs of AAC isodecoder in Lupinus_angustifolius plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GGTTTCGTGGTGTAGTTGGTTATCACGTCAGTCTAACACATTGAAGGTCTCCGGTTCGAACCCGGGCGAAGCCA
tRNA secondary structure
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TAATTTTATATAAATAATATTTTAAAACTAAAACTTTATTTCCAAATATTGTCATTTGATCATGTTTAAATAACTGTAAAACTCTGATACATCATAACAT
Downstream sequence (upto 100nt)
TAATGATTTTACATTTGTTTCTCTTTTAACAGGCCTATTCAATTCAACATAAGCCAGGCCCAAAATATAAAACGGGCCTAGCCCATTTATTATTATATCT
Mature tRNA
GGUUUCGUGGUGUAGUUGGUUAUCACGUCAGUCUAACACAUUGAAGGUCUCCGGUUCGAACCCGGGCGAAGCCA
HMM Score44.00
Secondary structure Score24.10