Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID57239_PtRNAdb
Plant SourceLupinus angustifolius     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA ID09.trna48
tRNA locuschr-LG-09 : 22877847 - 22877754 (-)
IsoacceptorTyr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Tyr isoacceptor in Lupinus_angustifolius plant by clicking on the isoacceptor]

IsodecoderGTA

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTA isodecoder in Lupinus_angustifolius plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
CCGACCTTAGCTCAGTTGGTAGAGCGGAGGACTGTAGTAGGTTAATTTCCTAATAGCCATCCTTAGGTCGCTGGTTCGAATCCGGCAGGTCGGA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>............................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
ATAGACACAAAAGTAAATGAAATATAACGTAATATTTGGCATCTTTGTCTGAGAAATTGTTATTTAATACATTACCATTAGTACGAAGGATATTTCGTAA
Downstream sequence (upto 100nt)
TTTTTTCTTCCGTAATTTTGTGGAGAACTATAAGTTATGTCACTTTCGTTCATGATTTAGTAATTAGTTCTAGTTAAAACATGGACAGATGAAGGATCAC
Mature tRNA
CCGACCUUAGCUCAGUUGGUAGAGCGGAGGACUGUAGAUCCUUAGGUCGCUGGUUCGAAUCCGGCAGGUCGGA
Intron Sequence
TAGGTTAATTTCCTAATAGCC
Intron Position38-58
Infernal Score74.2
HMM Score42.70
Secondary structure Score31.50