Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID56973_PtRNAdb
Plant SourceLupinus angustifolius     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA ID04.trna79
tRNA locuschr-LG-04 : 2444212 - 2444141 (-)
IsoacceptorGln

[NOTE: User can view the results of the consensus based study of all the tRNAs of Gln isoacceptor in Lupinus_angustifolius plant by clicking on the isoacceptor]

IsodecoderTTG

[NOTE: User can view the results of the consensus based study of all the tRNAs of TTG isodecoder in Lupinus_angustifolius plant by clicking on the isodecoder]

tRNA Sequence
B-Box
TGGAGTATAGCCAAATGGTAAGGCATCAGTTTTTGGTACCAGCATGCAAAGGTTCGAATCCTTTTACTCCAG
tRNA secondary structure
>>>>>>>..>>>.........<<<.>..>>...........<<<...>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CTTACTTGCTATATCCCTGCGTTCTTGTCATGCACGACTCGTTCGTCGAGCCCTACTTCTCCCCCCCCCTCTCAGTTCTATCGTCCAAAACAAGGCTGTA
Downstream sequence (upto 100nt)
ATTATATACACCCGATCGGATCTGTCAAGAACGAGCTGATGACTACAGGGGAAGCGGTTGATTGCAGTTCATGAGCCCAGCCCGGGAGGAATGCATGGTT
Mature tRNA
UGGAGUAUAGCCAAAUGGUAAGGCAUCAGUUUUUGGAGCAUGCAAAGGUUCGAAUCCUUUUACUCCAG
Intron Sequence
TACC
Intron Position37-40
Infernal Score35.5
HMM Score14.60
Secondary structure Score20.90