Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID56880_PtRNAdb
Plant SourceLupinus angustifolius     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA ID03.trna62
tRNA locuschr-LG-03 : 5020652 - 5020575 (-)
IsoacceptorAsn

[NOTE: User can view the results of the consensus based study of all the tRNAs of Asn isoacceptor in Lupinus_angustifolius plant by clicking on the isoacceptor]

IsodecoderGTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTT isodecoder in Lupinus_angustifolius plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GGATCCATAGGCTCAAATTGGAAAGAGCGCCCAACGGTTAAGTATGGGAGGATGGTGGTTCGAGTCCACCTGGATCCG
tRNA secondary structure
>>>>>>>...>>>>..........<<<<.>>>.>..........<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
GTTATGTTTCGTAATTTTCTTGGGTAAGCTTTTGGTTGTCATTGAATTTTTCATTTGATATAAAAATTCCCCTATGATAAAAACTACTCTTCGCAATGAT
Downstream sequence (upto 100nt)
CTGTCTATATGAACTGCTACTTGTGGTTGGGAAAATAATAATTGTGTTTGGGACTCTAGAAAGGGAGATGCTGGAATTGGAAAGATGTACAACTTTAGCC
Mature tRNA
GGAUCCAUAGGCUCAAAUUGGAAAGAGCGCCCAACGGUUAAUGGGAGGAUGGUGGUUCGAGUCCACCUGGAUCCG
Intron Sequence
AGT
Intron Position41-43
Infernal Score34.8
HMM Score15.20
Secondary structure Score19.60