Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID56849_PtRNAdb
Plant SourceLupinus angustifolius     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA ID03.trna33
tRNA locuschr-LG-03 : 38580803 - 38580875 (+)
IsoacceptorArg

[NOTE: User can view the results of the consensus based study of all the tRNAs of Arg isoacceptor in Lupinus_angustifolius plant by clicking on the isoacceptor]

IsodecoderCCT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CCT isodecoder in Lupinus_angustifolius plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GCGCCTGTAGCTCAGTGGATAGAGCGTCTGTTTCCTAAGCAGAAAGTCGTAGGTTCGACCCCTACCTGGCGCG
tRNA secondary structure
>>>>>.>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<.<<<<<.
Upstream sequence (upto 100nt)
CCTTTTTTTATTACCAACATGAATCAATTTTTGTAAGTTAGGTTGTTCTTTTATTATAGTATAGTTGTTAAATGTGTTATATATTGTTGGTTAACAAGTA
Downstream sequence (upto 100nt)
TCCTCATTTCTTTTTCTTTCATTAACATCATAAGAATCCGAGAACAGAGATGTATCGGAACATAACCTTCTAAAATTTAATACCACAATGTAGTTTACAT
Mature tRNA
GCGCCUGUAGCUCAGUGGAUAGAGCGUCUGUUUCCUAAGCAGAAAGUCGUAGGUUCGACCCCUACCUGGCGCG
HMM Score50.30
Secondary structure Score18.80