Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID56791_PtRNAdb
Plant SourceLupinus angustifolius     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA ID02.trna31
tRNA locuschr-LG-02 : 25527780 - 25527852 (+)
IsoacceptorPhe

[NOTE: User can view the results of the consensus based study of all the tRNAs of Phe isoacceptor in Lupinus_angustifolius plant by clicking on the isoacceptor]

IsodecoderGAA

[NOTE: User can view the results of the consensus based study of all the tRNAs of GAA isodecoder in Lupinus_angustifolius plant by clicking on the isodecoder]

tRNA Sequence
GCCAGGATAGCTCATCTGGTAGAGCAGAGGACTGAAAGTCCTCGTGTCACCAGTTCAAATCTGGTTCCTGGCA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
ACATTTATGTGGGACATAGAAAGTCACTATAATTAAGCTCTGCAGTATGTTTTTATCTAGCACATTTGATGGGCATAACTGGGATGGTGCACCAAGAATG
Downstream sequence (upto 100nt)
CATGATTAATTTGCATGAGTATGAGTATCTATTCCCAAATTCATTAAAATGATTAATACTCATTTTGACTGTTTGAATCCATTCGTGGCATTATATTTGA
Mature tRNA
GCCAGGAUAGCUCAUCUGGUAGAGCAGAGGACUGAAAGUCCUCGUGUCACCAGUUCAAAUCUGGUUCCUGGCA
HMM Score30.70
Secondary structure Score24.90