Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID56424_PtRNAdb
Plant SourceLinum usitatissimum     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-Lu5.trna70
tRNA locuschr-Lu5 : 1874290 - 1874218 (-)
IsoacceptorGlu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Glu isoacceptor in Linum_usitatissimum plant by clicking on the isoacceptor]

IsodecoderCTC

[NOTE: User can view the results of the consensus based study of all the tRNAs of CTC isodecoder in Linum_usitatissimum plant by clicking on the isodecoder]

tRNA Sequence
TCCGTTGTAGTCTAGTTGGTCAGGATATTCGGCTCTCACCCGAAAGACCCGGGTTCAAGTCCCGGCAACGGAA
tRNA secondary structure
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CACACGAGACTATTTTAGAGAGTCTGAAATGGAAAGCTTAATTCTAGTTAGGTGTCATATAGTTGTGTCTAAAATTATAAAACTCGATTGAATCGACGAA
Downstream sequence (upto 100nt)
TTTTTTTCTTCATTTTTGTCCATTCATTTGGACGAGTCGTTTAAGAACCCAGCTTCTCCTTTCATTTGGACTCAAAACTCATCTTATGTAAGTTTAACAG
Mature tRNA
UCCGUUGUAGUCUAGUUGGUCAGGAUAUUCGGCUCUCACCCGAAAGACCCGGGUUCAAGUCCCGGCAACGGAA
HMM Score53.50
Secondary structure Score25.70