Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID55150_PtRNAdb
Plant SourceLeersia perrieri     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-10.trna17
tRNA locuschr-10 : 10595648 - 10595576 (-)
IsoacceptorLys

[NOTE: User can view the results of the consensus based study of all the tRNAs of Lys isoacceptor in Leersia_perrieri plant by clicking on the isoacceptor]

IsodecoderCTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CTT isodecoder in Leersia_perrieri plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTTGGTTCGAGCCCCACGGTGTTCG
tRNA secondary structure
>..>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>.>>.......<<.<<<<<<..<.
Upstream sequence (upto 100nt)
TGCTTGCTTTGAGATATTCCCCTCAACCTCAAAGCTTCTAGCTGCAGTTCTCATCGATGTCTTTGCTTGTTTATATTTTATATTTCGACCGGTCAACAAA
Downstream sequence (upto 100nt)
TTGTAGTTTTATTTTTGGACTTCATTATTCTACTTTTTTTTTTGAGGGCATTCATTATTCTACTTGATTTTAGCATTCGATACGACTTTACTCCAACCCC
Mature tRNA
GCCCGUCUAGCUCAGUCGGUAGAGCGCAAGGCUCUUAACCUUGUGGUCGUUGGUUCGAGCCCCACGGUGUUCG
HMM Score60.30
Secondary structure Score-2.40