Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID54771_PtRNAdb
Plant SourceLagenaria siceraria     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-5.trna120
tRNA locuschr-5 : 10134112 - 10134041 (-)
IsoacceptorTrp

[NOTE: User can view the results of the consensus based study of all the tRNAs of Trp isoacceptor in Lagenaria_siceraria plant by clicking on the isoacceptor]

IsodecoderCCA

[NOTE: User can view the results of the consensus based study of all the tRNAs of CCA isodecoder in Lagenaria_siceraria plant by clicking on the isodecoder]

tRNA Sequence
GGATCTGTGGCGTAATGGTAGCGCGTCTGACTCCAAATTAGAAGGTTGCATATTCGATTCACGTCAGGTTCA
tRNA secondary structure
>>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>.>.........<.<<<<<<<<<.
Upstream sequence (upto 100nt)
TTTCTGTGAAGTATAACGAAAAATAATTCTGTGGGACTAGAAATTAATATATATTTATTTAAGATATAACTTGGCTTATACAAGCTTGATATCAAAGAGA
Downstream sequence (upto 100nt)
AATTTGTTTATATTTTAAAACAAAATATTGTTCATATATAAAATAAATTCATTGATATATCATTAATATATCAACACTTCTTAAAAATACATGACTCGTA
Mature tRNA
GGAUCUGUGGCGUAAUGGUAGCGCGUCUGACUCCAAAUUAGAAGGUUGCAUAUUCGAUUCACGUCAGGUUCA
HMM Score35.20
Secondary structure Score16.70