Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID5438_PtRNAdb
Plant SourceArabis alpina     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-4.trna76
tRNA locuschr-4 : 1175523 - 1175439 (-)
IsoacceptorTyr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Tyr isoacceptor in Arabis_alpina plant by clicking on the isoacceptor]

IsodecoderGTA

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTA isodecoder in Arabis_alpina plant by clicking on the isodecoder]

tRNA Sequence
B-Box
CCGACCTTAGCTCCGTTGGTAGAACGGAGGACTGTAGTCGAAGTAGAATATCCTTAGGTATCAGGTTCGAATCTAGTAGGTCGGA
tRNA secondary structure
>>>>>>>..>.>>........<<.<.>>>>>...................<<<<<....>>.>.>.......<<.<<<<<<<<<.
Upstream sequence (upto 100nt)
CTGAAATCAAAGAGTCGTACTTTGATAAATAATAAAAAAAAATAAGTAAGGATTCTCTAACGTTTAACGTGTATACGCATGCATTAGGTATAGTTCGTAT
Downstream sequence (upto 100nt)
ATGTTATCCCCTCGTAATATTTTGTTCCACTTTTACATTAGACGTGGAAAAAACTTAGTTGAACTAGTATGCCCCTAAAATGGCCTTTACAATATATTTT
Mature tRNA
CCGACCUUAGCUCCGUUGGUAGAACGGAGGACUGUAGAUCCUUAGGUAUCAGGUUCGAAUCUAGUAGGUCGGA
Intron Sequence
TCGAAGTAGAAT
Intron Position38-49
Infernal Score30.9
HMM Score14.40
Secondary structure Score16.50