Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID53646_PtRNAdb
Plant SourceIpomoea triloba     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-6.trna34
tRNA locuschr-6 : 16173267 - 16173338 (+)
IsoacceptorGly

[NOTE: User can view the results of the consensus based study of all the tRNAs of Gly isoacceptor in Ipomoea_triloba plant by clicking on the isoacceptor]

IsodecoderTCC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TCC isodecoder in Ipomoea_triloba plant by clicking on the isodecoder]

tRNA Sequence
GTGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATACACCCAGGTTTGACTCCCGGCAAACGCA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>.>>.......<<.<<<<<<<<<.
Upstream sequence (upto 100nt)
AGGGAAGCAGTATGAGATTGATTCTTGAAAATGTGGCTATCAAAGTTCCAAGTTAGTACACAGTTTTTATAGAAACTACGCATCCATATGGCAATGAGAA
Downstream sequence (upto 100nt)
TTGTTTGTTCAATTTGGTCTAACTGAAAAATTGAAATTTGACTTACTAATGATGATGGGATAAATAATTTTTCTAAAGTATGAAAATTTTAGTGTTCATA
Mature tRNA
GUGUUUGUAGUCCAACGGUUAGGAUAAUUGCCUUCCAAGCAAUACACCCAGGUUUGACUCCCGGCAAACGCA
HMM Score31.90
Secondary structure Score16.70