Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID53617_PtRNAdb
Plant SourceIpomoea triloba     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-6.trna123
tRNA locuschr-6 : 12958340 - 12958269 (-)
IsoacceptorGly

[NOTE: User can view the results of the consensus based study of all the tRNAs of Gly isoacceptor in Ipomoea_triloba plant by clicking on the isoacceptor]

IsodecoderTCC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TCC isodecoder in Ipomoea_triloba plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGGCCCGGGTTCGACTCCCGACAAATGCA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>.......<<<<.<<<<<<<.
Upstream sequence (upto 100nt)
TTGCAGCAAACCTTTCACATCTTTTATCAAACACTTGGTAGACATAGTAAGCAATCTATACTTTGTATCTATCAAACACTGTTAGGAAGGAACAGCGATG
Downstream sequence (upto 100nt)
GGCATTAGTGTGATTTTTGTGATATCCTGTATTGGATCATTTTATTATGCATTCTGCTGCTTTTATTGGGCCAAAATCAGAACTGAAATACCCATTCTTT
Mature tRNA
GCGUUUGUAGUCCAACGGUUAGGAUAAUUGCCUUCCAAGCAAUAGGCCCGGGUUCGACUCCCGACAAAUGCA
HMM Score44.60
Secondary structure Score22.50