Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID5333_PtRNAdb
Plant SourceArabis alpina     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-3.trna37
tRNA locuschr-3 : 28477757 - 28477684 (-)
IsoacceptorAsn

[NOTE: User can view the results of the consensus based study of all the tRNAs of Asn isoacceptor in Arabis_alpina plant by clicking on the isoacceptor]

IsodecoderGTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTT isodecoder in Arabis_alpina plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GCTGGAGTAGCTCAGTTGGTTAGAGCGTGTGGCTGTTAACCACAAGGTCAGAGGTTCGACCCCTCTCTCTAGCG
tRNA secondary structure
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TTTTTATGGAAGGTCCCAAGATGACAAGATCTTTTCATGATCTTATGTCCTTTTTCAAAATATAGGTATTATTCTTTATAGATTATTATATTAACAACAA
Downstream sequence (upto 100nt)
AATTTACATTTTTTTTCTACTAGTTTTTGGAGATCAATCATAACTCATAGGTAATGTTATAAAACTAGAAAATGGTGACTTGAGGTAAATAATATTCTTA
Mature tRNA
GCUGGAGUAGCUCAGUUGGUUAGAGCGUGUGGCUGUUAACCACAAGGUCAGAGGUUCGACCCCUCUCUCUAGCG
HMM Score54.70
Secondary structure Score26.70