Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID52805_PtRNAdb
Plant SourceIpomoea triloba     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-1.trna232
tRNA locuschr-1 : 21625170 - 21625086 (-)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Ipomoea_triloba plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Ipomoea_triloba plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GGGGTGGTGGCGCAGTGGGCTAGCGCGTAGGTCTCATAGCTTTTGAGTGATCCTGAGGTTGAGAGTTCGAGCCTCTCTCACCCCA
tRNA secondary structure
>>>>>>>..>>>>.........<<<<.>>>>....................<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TATTACTAAATTTACTACACCCCAGCTCTAAAGTATAAAAGCCCACAATTCCAGTAAAACATCTATAAAATAGTCTGCTCTAAAAGCTAAGTGTTAACAT
Downstream sequence (upto 100nt)
ATATCCCTTTTCCCCTCCGCCGTGAACGCGCGGTACAAAATCAAAGCATAAAAGGAGTTTCCGTTGCCGGGAATTGAACCCGGGTCTCTCGGGTGAGAGC
Mature tRNA
GGGGUGGUGGCGCAGUGGGCUAGCGCGUAGGUCUCAUAAUCCUGAGGUUGAGAGUUCGAGCCUCUCUCACCCCA
Intron Sequence
GCTTTTGAGTG
Intron Position39-49
Infernal Score60.3
HMM Score36.90
Secondary structure Score23.40