Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID52646_PtRNAdb
Plant SourceIpomoea triloba     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-16.trna77
tRNA locuschr-16 : 17117680 - 17117752 (+)
IsoacceptorLys

[NOTE: User can view the results of the consensus based study of all the tRNAs of Lys isoacceptor in Ipomoea_triloba plant by clicking on the isoacceptor]

IsodecoderCTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CTT isodecoder in Ipomoea_triloba plant by clicking on the isodecoder]

tRNA Sequence
GCCCGTCTAGCTCAGTTTGTAGGGTGCAAGGCTCTTAACCTTGTGGTCGTGGGTTTGAAACCTACGGTGGGCG
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
GAATTAGGAAAAAGATAAAAATGCTACCACGCATGAAGATCCCTTTTGTGTACGAAAAGATATGTTAATGTGAATCTTTAATTTAAACTTTGAATAACAA
Downstream sequence (upto 100nt)
TTTGTACTTTTACAGCTCCTTCACCTTCCTATCACCCACTTGACGTAGGAAATTACACAAATGACCTCATTTTTAATAGAGCTTAGTCACAATTAACGAA
Mature tRNA
GCCCGUCUAGCUCAGUUUGUAGGGUGCAAGGCUCUUAACCUUGUGGUCGUGGGUUUGAAACCUACGGUGGGCG
HMM Score44.90
Secondary structure Score12.00