Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID52150_PtRNAdb
Plant SourceIpomoea triloba     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-12.trna240
tRNA locuschr-12 : 6275841 - 6275761 (-)
IsoacceptorSer

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ser isoacceptor in Ipomoea_triloba plant by clicking on the isoacceptor]

IsodecoderTGA

[NOTE: User can view the results of the consensus based study of all the tRNAs of TGA isodecoder in Ipomoea_triloba plant by clicking on the isodecoder]

tRNA Sequence
CGTCAATATGTCCGAGTTGTTAAGGAGATAGACTTGAAATCTATTGGGCTATACCTGCGCAGGTTCAAATCCTGGTGACGT
tRNA secondary structure
>>>>...>..>>>..........<<<.>>>>>.......<<<<<..>>.>><<.<<...>>>>.......<<<<.<<<<<.
Upstream sequence (upto 100nt)
TGATTGATGTGTCAATATGTTCGAGTGGTTAAGGAGATAGACTTGAAATCTATTGGGCATTGCCTGCGTAGGTTCAAATCTTGCTGTTGACATTAGTATG
Downstream sequence (upto 100nt)
TTGTTGTTTATTTGGGTTCTTGACTTTTTTTGGATTGTCTTATTGGGATAACAATATAATTATCATGATTTTCCTTAAAAAATATTGTGAGTGAAGCGTC
Mature tRNA
CGUCAAUAUGUCCGAGUUGUUAAGGAGAUAGACUUGAAAUCUAUUGGGCUAUACCUGCGCAGGUUCAAAUCCUGGUGACGU
HMM Score22.80
Secondary structure Score16.30