Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID51676_PtRNAdb
Plant SourceIpomoea triloba     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-11.trna177
tRNA locuschr-11 : 22977196 - 22976997 (-)
IsoacceptorIle

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ile isoacceptor in Ipomoea_triloba plant by clicking on the isoacceptor]

IsodecoderAAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of AAT isodecoder in Ipomoea_triloba plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GGCTTATTAGCTCAGTTGGTCAGAGCGTCGTGCTAATAACGCGAAGGTCACAGGCAGTTGGTCAGAGCGTCGTGCTAATAACGCGAAGGTCACAGGTTGTTGGTCAGAGCGTCGTGCTAATAACGCGAAGGTCACAGGTTCGAGACCAGAGCGTCGTGCTAATAACGCGAAGGTCACAGGTTCGAGACTTGTATGAGCCA
tRNA secondary structure
>>>>>>>..>>>>.........<<<<.>>>>>.....................................................................................................................................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TTAATTTTTTTCAATTGGCTTATTAGCTCAGTTGGTCAGAGCGTCGTGCTAATCAATTGGCTTATTAGCTCAGTTGGTCAGAGCGTCGTGCTAATAACGT
Downstream sequence (upto 100nt)
TCACACTTATTATTGACTTTGAACTTGTACTATTTTTTGGTACGTTATTATATTTGAAGTCTCTTATAATAAAAACCCAATTAAATTTAGGGTTCGTTTT
Mature tRNA
GGCUUAUUAGCUCAGUUGGUCAGAGCGUCGUGCUAAUAACGCGAAGGUCACAGGUUCGAGACUUGUAUGAGCCA
Intron Sequence
ACGCGAAGGTCACAGGCAGTTGGTCAGAGCGTCGTGCTAATAACGCGAAGGTCACAGGTTGTTGGTCAGAGCGTCGTGCTAATAACGCGAAGGTCACAGGTTCGAGACCAGAGCGTCGTGCTAATA
Intron Position39-164
Infernal Score59.5
HMM Score37.80
Secondary structure Score21.70