Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID51580_PtRNAdb
Plant SourceIpomoea triloba     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-10.trna82
tRNA locuschr-10 : 19319308 - 19319392 (+)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Ipomoea_triloba plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Ipomoea_triloba plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GGGGTGGTGGCGCAATTGGCTAGCGTGTAGGTCTCATAGCTTTTGAGTTATCCTGAGGTCGGGAGTTCGAGCCTCTCTCAGCCCA
tRNA secondary structure
>>>.>>>..>>>>.........<<<<.>>>>....................<<<<.....>>>>>.......<<<<<<<<.<<<.
Upstream sequence (upto 100nt)
ATGAATTATTATAGTTTGGGTGGAAATGATATATTGATAATGAGTTATGAATTTATTTATGTTTGTTTCCATATGAATCTTGATATTAAACAAATGTGAA
Downstream sequence (upto 100nt)
TTATTTTAATCTCCTCCCTATAAAGCAAAAGGTTGAGTTATCGACAAAGTAGAGCGGAGGACTGTAGTTATCCTCCCTATAAAACAACTTGAGTTGTCGA
Mature tRNA
GGGGUGGUGGCGCAAUUGGCUAGCGUGUAGGUCUCAUAAUCCUGAGGUCGGGAGUUCGAGCCUCUCUCAGCCCA
Intron Sequence
GCTTTTGAGTT
Intron Position39-49
Infernal Score48.7
HMM Score37.20
Secondary structure Score11.50