Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID51561_PtRNAdb
Plant SourceIpomoea triloba     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-10.trna64
tRNA locuschr-10 : 12804058 - 12804252 (+)
IsoacceptorTyr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Tyr isoacceptor in Ipomoea_triloba plant by clicking on the isoacceptor]

IsodecoderATA

[NOTE: User can view the results of the consensus based study of all the tRNAs of ATA isodecoder in Ipomoea_triloba plant by clicking on the isodecoder]

tRNA Sequence
CTTTAGCTCAGTTGGTAGAGTGGAGGACTATAGATCCTTAGGTCACTGGTTCAAATTCGGCGTGGAGGA
tRNA secondary structure
>....>>>>........<<<<.>>>>>.....................................................................................................................................<<<<<......>>>>.......<<<<.......<.
Upstream sequence (upto 100nt)
GAGGACTATAGTTGGACTTAGGTTAGCTCAGTTGGTAGAGCGGAGGACTATAGTTGGACTTTAGCTCAGTCAGTTGGTAGAGCGGAGGACTATAGTTGGA
Downstream sequence (upto 100nt)
CTATAGTTGCAGTAATTTGAGTTGAAATCCTTAGGTCACTAGTTCAAATTCGGCAGGTCGGATTACTAACGTTTTGTTTGATAAAGCTTTGCTTTGTTTT
Mature tRNA
CUUUAGCUCAGUUGGUAGAGUGGAGGACUAUAGAUCCUUAGGUCACUGGUUCAAAUUCGGCGUGGAGGA
Intron Sequence
TTACAGCTCAGTTGGTAGAGTGGAGGACTATAGTTACAGTAATTTGAGTTGAAATCCTTAGAGTGGCAGTAATTTGAGTTGAAATCCTTAGAGTGGAGGACTATAGTTACAGTAATTTGAGTTGAA
Intron Position34-159
Infernal Score34.3
HMM Score20.50
Secondary structure Score13.80