Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID50972_PtRNAdb
Plant SourceIpomoea trifida     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-13.trna164
tRNA locuschr-13 : 22557285 - 22557213 (-)
IsoacceptorArg

[NOTE: User can view the results of the consensus based study of all the tRNAs of Arg isoacceptor in Ipomoea_trifida plant by clicking on the isoacceptor]

IsodecoderCCT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CCT isodecoder in Ipomoea_trifida plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GTGCCTGTAGCTCAGTGGATAGAGCGTTTGTTTCCTAAGCAAAAAGTCATAGGTTCGACCCCTATCTGGCGCG
tRNA secondary structure
>>>>>.>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<.<<<<<.
Upstream sequence (upto 100nt)
GAAAGTCATAGGTTCTACCCCTATTTGGTGCGTTTTCTATTCTCTTCACCTAAATATTGTATAGGTATTTTAATTACTTTAATTAGAATCATACAACGTT
Downstream sequence (upto 100nt)
CCATGCTATAATATTTAAAATTTTGTCAATCCCTTTGACAAATTTTGCTCGCCCATTTTTTTTTTTTTTTTTTTAAATCAAATTTTGCTCGCCCAATTTA
Mature tRNA
GUGCCUGUAGCUCAGUGGAUAGAGCGUUUGUUUCCUAAGCAAAAAGUCAUAGGUUCGACCCCUAUCUGGCGCG
HMM Score45.10
Secondary structure Score16.60