Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID50768_PtRNAdb
Plant SourceIpomoea trifida     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-11.trna59
tRNA locuschr-11 : 11891031 - 11890952 (-)
IsoacceptorGlu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Glu isoacceptor in Ipomoea_trifida plant by clicking on the isoacceptor]

IsodecoderTTC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TTC isodecoder in Ipomoea_trifida plant by clicking on the isodecoder]

tRNA Sequence
B-Box
TCCGTTGTCGTCCAGCGGTTAGGATATCTGGCTTTCACGGTTTCACCCAGGAGACCCGGGTTCGATTCCCGGCAACGGAA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>...............<<<<<....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CATGTTCAATCCACGTTCATTGCAATACATGCTTTATATTTTTGCAATGTAAAACCTTTATTTATAATTTAAAAAACGTCTAACAGTAAACTTCCACCAC
Downstream sequence (upto 100nt)
TAATTTTATTGTTTATTCAATCTTTCAAACGTGAAAACAGCAGTCTTTCAATTTAGTGAAGATTTGGATTGCACAGGTAAGTAAATGAGCTAATGTTGGT
Mature tRNA
UCCGUUGUCGUCCAGCGGUUAGGAUAUCUGGCUUUCACCCAGGAGACCCGGGUUCGAUUCCCGGCAACGGAA
Intron Sequence
CGGTTTCA
Intron Position38-45
Infernal Score64.8
HMM Score40.70
Secondary structure Score24.10