Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID50338_PtRNAdb
Plant SourceIpomoea trifida     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-08.trna123
tRNA locuschr-08 : 16097453 - 16097380 (-)
IsoacceptorVal

[NOTE: User can view the results of the consensus based study of all the tRNAs of Val isoacceptor in Ipomoea_trifida plant by clicking on the isoacceptor]

IsodecoderAAC

[NOTE: User can view the results of the consensus based study of all the tRNAs of AAC isodecoder in Ipomoea_trifida plant by clicking on the isodecoder]

tRNA Sequence
GGTTTCGTGGTGTAGTTGGTTATCACGTCAGTCTAACACACTGAAGGTCTCCGGTTTGAGTCCGGGCGAAGCCA
tRNA secondary structure
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
ATTTTCTGAAAATCTTTTCCTGGGAAGTGTTTTTCCTCCCAACCAAACATGCCCTTATTGTGACGATAAAACCTTTTCATTGAAGATATTGTACAGGATT
Downstream sequence (upto 100nt)
TGTTCGTTGTTTTTTATAGTGCATGCATTTGCGGAACAATCCTTTGAATTCTGAAACTTTAATTGTACCTAATTTTTATTTTTATCAAAATAAATAAAAA
Mature tRNA
GGUUUCGUGGUGUAGUUGGUUAUCACGUCAGUCUAACACACUGAAGGUCUCCGGUUUGAGUCCGGGCGAAGCCA
HMM Score42.20
Secondary structure Score24.40