Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID50001_PtRNAdb
Plant SourceIpomoea trifida     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-06.trna14
tRNA locuschr-06 : 6437734 - 6437814 (+)
IsoacceptorLeu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Leu isoacceptor in Ipomoea_trifida plant by clicking on the isoacceptor]

IsodecoderAAG

[NOTE: User can view the results of the consensus based study of all the tRNAs of AAG isodecoder in Ipomoea_trifida plant by clicking on the isodecoder]

tRNA Sequence
GTGGAGATGGCCGAGTTGGTTTAAGGCGCCAGATTAAGGTTCTGGTTTGAAAGGGCGTGGGTTCAAATCCCACTCTCCACC
tRNA secondary structure
>>>>>>>..>>>............<<<.>>>>>.......<<<<<...........>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TATTCAGCACAAGTTGCAATAACTAGCAGGTATAGGCTTCTGTTTAACGGAAGCTATCTCTATGATTTCCATATTAAACTTGCAGAAATATAATTGTTGT
Downstream sequence (upto 100nt)
TCAACTTTACCTTAATTCTCCATATATATATTAAAACCATGCCCCAGAAACTAATATCTATGGAAGGTTTTCAACTTTAACACAGTGAAAGAGGGTAATA
Mature tRNA
GUGGAGAUGGCCGAGUUGGUUUAAGGCGCCAGAUUAAGGUUCUGGUUUGAAAGGGCGUGGGUUCAAAUCCCACUCUCCACC
HMM Score44.40
Secondary structure Score23.90