Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID49991_PtRNAdb
Plant SourceIpomoea trifida     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-06.trna140
tRNA locuschr-06 : 25838378 - 25838305 (-)
IsoacceptorThr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Thr isoacceptor in Ipomoea_trifida plant by clicking on the isoacceptor]

IsodecoderAGT

[NOTE: User can view the results of the consensus based study of all the tRNAs of AGT isodecoder in Ipomoea_trifida plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GCTCTCGTAGCTCAGTTGGTTAGAGCACCCGTTTAGTAAGTGGGAGGTCTTGAGTTCGACTCTCAACGAGAGCA
tRNA secondary structure
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
GGAGGTCTTGAGTTCGACTCTCAACGAGAGCAATACATTTTTGCCTTTTGCAGTCTGGCCTGGTATGTTAAGTATGACTATATTAAAATTCAAAAAACAA
Downstream sequence (upto 100nt)
AAGTTTTTCCCCTTTTCAACTGGGTTTCAGTCCATTTTGACAGTACTAGTACGACCAACTCACTTGAACATATGCTTATTGTTTAAATTTAAATTTATAT
Mature tRNA
GCUCUCGUAGCUCAGUUGGUUAGAGCACCCGUUUAGUAAGUGGGAGGUCUUGAGUUCGACUCUCAACGAGAGCA
HMM Score44.30
Secondary structure Score27.30