Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID49362_PtRNAdb
Plant SourceIpomoea trifida     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-02.trna56
tRNA locuschr-02 : 19695221 - 19695307 (+)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Ipomoea_trifida plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Ipomoea_trifida plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GGTGGTGGTGGCGCATTGGCTAGCGGCGTAGGTCTCATAAGCTTTTGATGATCCTGAGGGTCGAGAGTTCGAGCCTCTCTCACCCCA
tRNA secondary structure
>>.>>>>>..>>>>........<<.<<.>>>>....................<<<<......>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TTTACAAAACCCCCCCTTGCTTTTTCTTTAAATTGTAAAGAGCCCACGGTTCCAGCAAAACATCTATAATAGTCTTCTTCTAAAACTTCGTGTCAACATG
Downstream sequence (upto 100nt)
ATATCCTTTTTCCCTCCGCCGAGAACGCGCGTGCAAAAAAATCAAAGCATTTAAAGCGACTTCCATTGCCGGAATCGAACCGAGTCTCTCGGGTGAGGCC
Mature tRNA
GGUGGUGGUGGCGCAUUGGCUAGCGGCGUAGGUCUCAUAAUCCUGAGGGUCGAGAGUUCGAGCCUCUCUCACCCCA
Intron Sequence
AGCTTTTGATG
Intron Position40-50
Infernal Score34.2
HMM Score21.40
Secondary structure Score12.80