Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID49359_PtRNAdb
Plant SourceIpomoea trifida     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-02.trna53
tRNA locuschr-02 : 19691372 - 19691461 (+)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Ipomoea_trifida plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Ipomoea_trifida plant by clicking on the isodecoder]

tRNA Sequence
GGGTTGGTGGCGCAGTTTGGCTAGCGGCGTAGGTCTCATAATCCTGAGGTTGAGAGTTTTCGAGCCTCCTCTCACCCA
tRNA secondary structure
>>>>.>>..>>>>..........<<.<<.>>>>.....................<<<<.....>.>>>.........<<<.<<<.<<<<.
Upstream sequence (upto 100nt)
ACTAAATTTACTAACCCTTGCTCTAAATGTAAAAAGCCCAAACAGGTTCCAGCAAAACAATCTATTAAATCAGTCTTCCCTAAAAGCTGCGGTTCAACAT
Downstream sequence (upto 100nt)
ATATCCTTTTTCCCTCCGCCAGAAGCGCGGTGCCCAAAATCAAAGCATAAAAGCCTTTCATTGCCGGGAATCGAAACCCGGTCCTCCTCGGGTGGAGAGC
Mature tRNA
GGGUUGGUGGCGCAGUUUGGCUAGCGGCGUAGGUCUCAUAAUCCUGAGGUUGAGAGUUUUCGAGCCUCCUCUCACCCA
Intron Sequence
GCTTCTTGAGTG
Intron Position41-52
Infernal Score27.2
HMM Score19.20
Secondary structure Score8.00