Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID49274_PtRNAdb
Plant SourceIpomoea trifida     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-02.trna207
tRNA locuschr-02 : 19703168 - 19703084 (-)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Ipomoea_trifida plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Ipomoea_trifida plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GGGGTGGTGGCGCAGTTGGCTAGTACGTAGGTCTCATAGCTTCTGAGTGATCCTGAGGTCGAGAGTTCGAGCCTCTCTCACCCCA
tRNA secondary structure
>>>>>>>..>.>>.........<<.<.>>>>....................<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TATTGCTAAATTTACTGCACCTCTACTCTAAAATGTAAAAGCCCACAGTTCCAGCAAAACATCTATAAAATAGTCTTCTCGAAAAGCTACGTGCCAACAT
Downstream sequence (upto 100nt)
ATATCCTTTCCCCTCCGCCGTGAACTCGCGGTGCAAAATCAAAGCATAAAAGGACTTTCCGTTGCCGGGAATTGAACTCGGGTCCCTCGGGTGAGAGCCG
Mature tRNA
GGGGUGGUGGCGCAGUUGGCUAGUACGUAGGUCUCAUAAUCCUGAGGUCGAGAGUUCGAGCCUCUCUCACCCCA
Intron Sequence
GCTTCTGAGTG
Intron Position39-49
Infernal Score50.6
HMM Score36.00
Secondary structure Score14.60