Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID48483_PtRNAdb
Plant SourceIpomoea batatas     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-7.trna155
tRNA locuschr-7 : 20109332 - 20109263 (-)
IsoacceptorGly

[NOTE: User can view the results of the consensus based study of all the tRNAs of Gly isoacceptor in Ipomoea_batatas plant by clicking on the isoacceptor]

IsodecoderGCC

[NOTE: User can view the results of the consensus based study of all the tRNAs of GCC isodecoder in Ipomoea_batatas plant by clicking on the isodecoder]

tRNA Sequence
GCACCAGTGGTCTAGTGGTAGAATAGTACTTGCCACGGTACAGACCCGGGTTTGATTCCCGGCTGGTGCA
tRNA secondary structure
>>>>>>>..>>.>.......<.<<.>>>>.......<.<<<....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATATATATATATATATATATATATATATATATATATATATATATATATATAAATCTCATGTAGGGA
Downstream sequence (upto 100nt)
TCCATTTTCTTCTCAAAAAAAAAATAAATCTCATGTAGGGCCCATTTTTATGCTATGTCCCGAGCCTATAAAATGATAGGAACGGACCTGATGCCATTCT
Mature tRNA
GCACCAGUGGUCUAGUGGUAGAAUAGUACUUGCCACGGUACAGACCCGGGUUUGAUUCCCGGCUGGUGCA
HMM Score29.90
Secondary structure Score13.50