Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID47006_PtRNAdb
Plant SourceIpomoea batatas     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-14.trna7
tRNA locuschr-14 : 2556090 - 2556253 (+)
IsoacceptorIle

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ile isoacceptor in Ipomoea_batatas plant by clicking on the isoacceptor]

IsodecoderAAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of AAT isodecoder in Ipomoea_batatas plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GGCTTATTAGCTTAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCACAGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAACGCGAAGGTCACAGGTTCGAGACCTGTATGAGCCA
tRNA secondary structure
>>>>>>>..>>>>.........<<<<.>>>>>.................................................................................................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TAGATCTCATGCTCCAATTGGTTGAACTTCCTATATTTCAAAATTTACCAATGTAAAGAAGCAATTTTAAAATTCTACCTTTATTTAATTTTTTAGAATT
Downstream sequence (upto 100nt)
TCACACTTATTATTGACTTTGAGCTTGTTCTATTTTTTGGTACGTCATTATATTTGAAGTCTCTAATTTTCAAAACACAATTAAGTTTAGGGTTCGTTTT
Mature tRNA
GGCUUAUUAGCUUAGUUGGUUAGAGCGUCGUGCUAAUAACGCGAAGGUCACAGGUUCGAGACCUGUAUGAGCCA
Intron Sequence
ACGCGAAGGTCACAGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATA
Intron Position39-128
Infernal Score65.6
HMM Score41.00
Secondary structure Score24.60