Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID46468_PtRNAdb
Plant SourceIpomoea batatas     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-12.trna133
tRNA locuschr-12 : 50439615 - 50439695 (+)
IsoacceptorLeu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Leu isoacceptor in Ipomoea_batatas plant by clicking on the isoacceptor]

IsodecoderAAG

[NOTE: User can view the results of the consensus based study of all the tRNAs of AAG isodecoder in Ipomoea_batatas plant by clicking on the isodecoder]

tRNA Sequence
GTTGAGATGACCGAGTTGGTTTAAGGTGCCAGATTAAGGTTCTGGTCTGAAAGGGCGTGGGTTCAAATCCCGCTCTCAACA
tRNA secondary structure
>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>...<<...>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
AATTCTTAAGGCTTCTTAGGTTGTGTTGGTCAAACACCCCAATGATTCATGCTTTCGTAAATATTTTAATAAAAAATTCCATAAGACAAATTAACAATGA
Downstream sequence (upto 100nt)
ATGATATTTTCAGCAATTTTATATTACTATATCAATATGATTTTTTTAAAACCTTTTGCCCCCTACAACTAATCTAAATAAAATTTCACCCCTTATTTTT
Mature tRNA
GUUGAGAUGACCGAGUUGGUUUAAGGUGCCAGAUUAAGGUUCUGGUCUGAAAGGGCGUGGGUUCAAAUCCCGCUCUCAACA
HMM Score44.30
Secondary structure Score22.40