Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID46408_PtRNAdb
Plant SourceIpomoea batatas     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-11.trna74
tRNA locuschr-11 : 25998780 - 25998864 (+)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Ipomoea_batatas plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Ipomoea_batatas plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GGGGTGGTGGCGCAGTTGGCTAGCGCGTAGGTCTCATAGCTTCTGAGTTATCCTGAGGTCGAGAGTTCGAGCCTCTCTCACCTCA
tRNA secondary structure
>>>>>>>..>>>>.........<<<<.>>>>....................<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
ATGAATTATTATAGTTTTGGTGGAAATGAAATTTTGATAATGAGTTATGAATTTATTTATGTTTGCTTCTATATGAATCTTGATATTAAGCAAATGTGAA
Downstream sequence (upto 100nt)
TTATTTTTATCTCCTCCCCATAAAAAAGGTTGAGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Mature tRNA
GGGGUGGUGGCGCAGUUGGCUAGCGCGUAGGUCUCAUAAUCCUGAGGUCGAGAGUUCGAGCCUCUCUCACCUCA
Intron Sequence
GCTTCTGAGTT
Intron Position39-49
Infernal Score62.3
HMM Score39.70
Secondary structure Score22.60