Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID46125_PtRNAdb
Plant SourceIpomoea batatas     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-10.trna24
tRNA locuschr-10 : 11800394 - 11800478 (+)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Ipomoea_batatas plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Ipomoea_batatas plant by clicking on the isodecoder]

tRNA Sequence
B-Box
AGGATGGTGTTGCAATTGGCTAGCGCGTAGGTCTCATAGCTTTTGACTTATCCTGAGGTCCAGAGTTCGAGCCTCTCTCACCCCA
tRNA secondary structure
.>>.>>>...>>>.........<<<..>>>>....................<<<<......>>>>.......<<<<.<<<.<<..
Upstream sequence (upto 100nt)
AATGAATTATTATAGTTTTGGTGGAAATGAAATTTTGATAATGAGTTATGAATTTATTTATGTTTGTTTCTATATGAATCTTGATATTAAGCAAATGTGA
Downstream sequence (upto 100nt)
TTATTTTTATCTCCTCCTCATAAAAAAAAGGTTGAGTTGTCGACAAATAAAACCAATTTGGGACATCTAGCATTATCCGACCTTAGCTTAGTTGGTAGAG
Mature tRNA
AGGAUGGUGUUGCAAUUGGCUAGCGCGUAGGUCUCAUAAUCCUGAGGUCCAGAGUUCGAGCCUCUCUCACCCCA
Intron Sequence
GCTTTTGACTT
Intron Position39-49
Infernal Score31.3
HMM Score24.70
Secondary structure Score6.60