Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID46111_PtRNAdb
Plant SourceIpomoea batatas     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-10.trna182
tRNA locuschr-10 : 2618286 - 2618214 (-)
IsoacceptorVal

[NOTE: User can view the results of the consensus based study of all the tRNAs of Val isoacceptor in Ipomoea_batatas plant by clicking on the isoacceptor]

IsodecoderTAC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TAC isodecoder in Ipomoea_batatas plant by clicking on the isodecoder]

tRNA Sequence
GTTGGTGTGGTGTAGTGGTTATCACATTAGTCTTACACACTAAAGGTCCCCAGTTCACTCCTGGGCATCAACA
tRNA secondary structure
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
ATATATATATACATNCCATGGATAACCTCTACAATTAAATTTTACGACTCGGTGTTGAAAATGAAATGTTAAATATTCCCAGGATTGATATGTTTATCCA
Downstream sequence (upto 100nt)
TTTATCTAACATGTATACACACATTATATAAATTGGTTTCACATTATATTAAATTTAACATACACAAATTAAATTATATAACATATGTAATATACACAAC
Mature tRNA
GUUGGUGUGGUGUAGUGGUUAUCACAUUAGUCUUACACACUAAAGGUCCCCAGUUCACUCCUGGGCAUCAACA
HMM Score31.70
Secondary structure Score33.10