Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID46039_PtRNAdb
Plant SourceIpomoea batatas     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-10.trna113
tRNA locuschr-10 : 34870746 - 34870670 (-)
IsoacceptorAsp

[NOTE: User can view the results of the consensus based study of all the tRNAs of Asp isoacceptor in Ipomoea_batatas plant by clicking on the isoacceptor]

IsodecoderGTC

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTC isodecoder in Ipomoea_batatas plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GCACCAGTGGTCTAGTGGTAGAATAGTACCCTGTCACGATACAGACCCGGACCCGGGTTCGATTCCCGGCTGGTGCA
tRNA secondary structure
>>>>>>>..>>.>.......<.<<.>>>.>.......<.<<<..........>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TGGGCAATTTTGATCACTTACTATTTAGCATTACTATGTCATAAAGTGAAAGGAAAATAGATGATAATAATATCAAAATACGAGTAGAATGAAACAAGAA
Downstream sequence (upto 100nt)
TTCACTTGAAGTGATGACGATATTGCGCTGTTGTAGTGATTGGGTCGCTACGTTAAGTCTGAACTCTAAGTGGACGACTAAATAGCGCCTCTGAGCTTCT
Mature tRNA
GCACCAGUGGUCUAGUGGUAGAAUAGUACCCUGUCACGAUACAGACCCGGACCCGGGUUCGAUUCCCGGCUGGUGCA
HMM Score42.40
Secondary structure Score11.40