Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID45934_PtRNAdb
Plant SourceGossypium raimondii     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-9.trna111
tRNA locuschr-9 : 15714028 - 15713950 (-)
IsoacceptorAsn

[NOTE: User can view the results of the consensus based study of all the tRNAs of Asn isoacceptor in Gossypium_raimondii plant by clicking on the isoacceptor]

IsodecoderATT

[NOTE: User can view the results of the consensus based study of all the tRNAs of ATT isodecoder in Gossypium_raimondii plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GGATCCATAAGCTCAAAATCGGCAGAGCGCTCAAACATTGTTGTTTGGGAGGCTGGTGGTTCGAATCCACCTGGATCCT
tRNA secondary structure
>>>>>>>...>>>>..........<<<<.>>>>>..........<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
AAAGGCTCAATTTTTGGGGCCTTATATTTAACTAACTTACATGCCTTATGGGCTATTAGGTGTTGTAGGAATTCGGCCGTACATCCGTCCTCCTTAATAT
Downstream sequence (upto 100nt)
TAATTTCTTATGGTTTTAATTCCAACTTTTGATGAGAAATATACATGCAAAAATAATCGATTGATCTAAAAATAACAAAATAAAGACGAAATCAGGTTTA
Mature tRNA
GGAUCCAUAAGCUCAAAAUCGGCAGAGCGCUCAAACAUUGUUUGGGAGGCUGGUGGUUCGAAUCCACCUGGAUCCU
Intron Sequence
TTG
Intron Position41-43
Infernal Score30.9
HMM Score16.00
Secondary structure Score14.90