Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID45902_PtRNAdb
Plant SourceGossypium raimondii     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-8.trna63
tRNA locuschr-8 : 35881154 - 35881081 (-)
IsoacceptorArg

[NOTE: User can view the results of the consensus based study of all the tRNAs of Arg isoacceptor in Gossypium_raimondii plant by clicking on the isoacceptor]

IsodecoderACG

[NOTE: User can view the results of the consensus based study of all the tRNAs of ACG isodecoder in Gossypium_raimondii plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GGGCCTGTAGCTCAGAGGATTAGATCACGTGGCTACGAACCACGGTGTCGGGGGTTCGAATCCCTCCTCGCCCA
tRNA secondary structure
>>>>..>..>.>>.........<<.<.>>>>>.......<<<<<.....>>>>>.......<<<<<<..<<<<.
Upstream sequence (upto 100nt)
GAAAGGCACTTTCACATCTTCTTAACCCGAAATGGCTGGGGAGAGGAAAGGTTCCTTTTTTTAGGGTACTCCTGGGAACAGATCCAGTGGAGACGAGGTG
Downstream sequence (upto 100nt)
CAACCGGCCCAAAATGGAAGGACCTTTCCCTCTGGGGGTAGGAAAATCATGATCGGGATATGGAAAGTGAGTTTTCAAAACTCAGTATGTAACAAATAAC
Mature tRNA
GGGCCUGUAGCUCAGAGGAUUAGAUCACGUGGCUACGAACCACGGUGUCGGGGGUUCGAAUCCCUCCUCGCCCA
HMM Score37.60
Secondary structure Score9.40