Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID45524_PtRNAdb
Plant SourceGossypium raimondii     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-3.trna21
tRNA locuschr-3 : 39308217 - 39308288 (+)
IsoacceptorArg

[NOTE: User can view the results of the consensus based study of all the tRNAs of Arg isoacceptor in Gossypium_raimondii plant by clicking on the isoacceptor]

IsodecoderTCT

[NOTE: User can view the results of the consensus based study of all the tRNAs of TCT isodecoder in Gossypium_raimondii plant by clicking on the isodecoder]

tRNA Sequence
GCATCCATGGTCTAATGGATAGGACAGAGGTCTTCTAAACCTTTGGTATAGGTTCAAATCCTATTGGACACA
tRNA secondary structure
>..>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<..<.
Upstream sequence (upto 100nt)
GTGCCAAAATTTCACATGTTCTTTAGTTTTTCCAACCAAGAGAAAAGAAAAAATTGAACAAGAGAAAAAAAGTCAAAATGTCAAAATATCATAATGAAAA
Downstream sequence (upto 100nt)
ATTAGAATCAATTTCTCTATATTCCATTAAGTTAGAATTTTCAATTTATAATTTTTCCTGAAGTCGAAAATGTTCCATTTGTTCTTGAATAGCGTCATTC
Mature tRNA
GCAUCCAUGGUCUAAUGGAUAGGACAGAGGUCUUCUAAACCUUUGGUAUAGGUUCAAAUCCUAUUGGACACA
HMM Score31.00
Secondary structure Score23.40