Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID45333_PtRNAdb
Plant SourceGossypium raimondii     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-13.trna56
tRNA locuschr-13 : 23796979 - 23796907 (-)
IsoacceptorPhe

[NOTE: User can view the results of the consensus based study of all the tRNAs of Phe isoacceptor in Gossypium_raimondii plant by clicking on the isoacceptor]

IsodecoderGAA

[NOTE: User can view the results of the consensus based study of all the tRNAs of GAA isodecoder in Gossypium_raimondii plant by clicking on the isodecoder]

tRNA Sequence
GTTGGGGTAGCTCAATTGGTAGAGCAGAGGACTGAAAATCCTCGTGTCACCAGTTCAAATCTGGTTCCTGGCA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TTCACCCAATCATCAGCTAATCATTACATTTAAAAAAAAAATTTGTGACGTCACTATGTCAGGCAACACCTAGTATTATGAGGATAATGCGTCGGTAATG
Downstream sequence (upto 100nt)
TATGATTAATTTGTATGAGTATTTACTCTACAAATTAATTTATATGGATCGACATAATACATACTTATCTAGCTAGGTATCTGAGATTAAACCCTCTCTT
Mature tRNA
GUUGGGGUAGCUCAAUUGGUAGAGCAGAGGACUGAAAAUCCUCGUGUCACCAGUUCAAAUCUGGUUCCUGGCA
HMM Score42.60
Secondary structure Score15.40