Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID44395_PtRNAdb
Plant SourceGossypium hirsutum     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-1.trna16
tRNA locuschr-1 : 78132559 - 78132631 (+)
IsoacceptorAla

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ala isoacceptor in Gossypium_hirsutum plant by clicking on the isoacceptor]

IsodecoderTGC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TGC isodecoder in Gossypium_hirsutum plant by clicking on the isodecoder]

tRNA Sequence
GGGAGTGTAGCTCATATGGTAGAGCGCTCGCTTTGCATGCGAGAGGCGCGGGGTTCAATTCCCCGCACTTCCA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TGGAATGGGAGTCTGAAATATATGCAGTAATAATATTAAACTAGCGAGTATCTTTTTAGTACATATCAAAATCTAATATACGTTTTCAATGATTCCAATC
Downstream sequence (upto 100nt)
AAATTATTTTTTTCACAATATTTTCTGAATTTTTATTGTCAAAACGTCAACAGTCTTTTGCTATATAAATAATTTCACTGATAAACTAAGTTTTCAAATC
Mature tRNA
GGGAGUGUAGCUCAUAUGGUAGAGCGCUCGCUUUGCAUGCGAGAGGCGCGGGGUUCAAUUCCCCGCACUUCCA
HMM Score42.70
Secondary structure Score24.30