Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID42673_PtRNAdb
Plant SourceGossypioides kirkii     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-KI_13.trna42
tRNA locuschr-KI_13 : 38730498 - 38730425 (-)
IsoacceptorIle

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ile isoacceptor in Gossypioides_kirkii plant by clicking on the isoacceptor]

IsodecoderTAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of TAT isodecoder in Gossypioides_kirkii plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GGTCCCGTAGCTCAGTCGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGAGTTCGAGCCTCTCCGGGACCA
tRNA secondary structure
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<.
Upstream sequence (upto 100nt)
TATTGGTTGGTCCCGTAGCTCAGTCGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGAGTTCGAGCCTCGCCGGGACCATCGTATATGTGTTTGGTT
Downstream sequence (upto 100nt)
TCGTCGTATATGTGTGTTTGGTTGTATATTTTGGATTTTCCTCAAATCTTTAAGTCAAAGTTATTTATAGCAGCCTGAAAGTCCATTTAGCCAGCACGGC
Mature tRNA
GGUCCCGUAGCUCAGUCGGUUAGAGCGUUGGUCUUAUGAGCCGAAGGUCGCGAGUUCGAGCCUCUCCGGGACCA
HMM Score60.30
Secondary structure Score12.20